OrnTx - Expression Atlas for Ornamental Plant Transcriptomics

The first R/Bioconductor package for ornamental plant transcriptomics. Provides a complete RNA-seq pipeline (download, QC, alignment, import), a curated Rosa chinensis expression atlas, a 64-gene floriculture trait database anchored to Arabidopsis orthologs, multi-tool import support (STAR, featureCounts, HTSeq, Salmon), auto-detection of three Rosa chinensis gene ID formats, and cross-species validation on Tagetes erecta.